Enseignement

Machine Learning, Masters BMC, Bioinfo, MODE, CSM(2017)

- COURSE MATERIAL
Lecture notes (slides)
Leukemia, prediction of AML/ALL: Leukemia1 R markdown (Dimension reduction, clustering), Leukemia2 R markdown (Classification),
                      Python code
                      R code
Ozone Python codes, R codes, Ozone dataset
Digits Python code
Wisconsin Brest Cancer Dataset data, data description
    This dataset will be used for the labs (e.g. to practice the machine learning methods).
- PROJECTS
1. Prediction of ENSO Index (El Nino-El Nina) from sea surface temperature data
Python version : notebook
R version Data for R (first download the data and then loda then into R using the command load("ElNino.Rdata") ): ElNino.Rdata

(R markdown)

2. Prediction of ER+/ER- in Breast Cancer from micro-array data (R markdown)
3. Prediction of relapse after 5 year in Cancer from micro-array data (R markdown)

- FREE SOFTWARES with Machine Learning packages
R with Rstudio interface
Python with spyder interface
- COMMERCIAL SOFTWARES
Matlab, Machine Learning toolbox

OIB - Introduction à Python L2 (2017)

Notes de cours, script cours no 1, supports cours (slides)
TD1, , TD1_corrigé, TD2, TD2 corrigé
TP1, TP2 
TD3/TP3  + skin_cancer.dat , corrigé :
TP4 + tas_1901_2015.csv + fromages.dat
TP2 corrigé, TP3 corrigé (partie 1) , TP3 Régression linéaire Formules.pdf et programme Python : skin_cancer.py
TP4 corrigé (partie 1)
PROJET OIB (2017) : traitement d'image (travail à rendre avant le 26 nov. 2017)
Description du projet et instructions :  sujet du projet
Images : damier-ng.png
, visage1.png , starwars.jpg , paysage_zen.png

Pour utiliser Python sur un ordinateur personnel installer thonny (http://thonny.org)
ou anaconda (https://www.anaconda.com/download/#macos) qui contient une version de python.
projet_image_corrige.py

Graphical models, Master 2, 2017

Lecture notes
Anger Ising model and Restricted Bolzman Machine (R markdown)
Ozone Gaussian Graphical Model (R markdown)
Customer's satisfaction survey, data : mobi.Rdata
Sachs protein data (R markdown)
Lab/homework
Datasets: student_mat.csv, student_por.csv, student_description.txt, student-read-data.R

BIOSTAT M1 - Clustering
slides

Machine Learning, Data Science for Environment Conference (Brest, 2017/07)

Lecture notes
Python codes
R codes

Ozone dataset

 

Modèles linéaires généralisés (2017)

GLM Pharmacologie Clinique et Epidémiologie